Index of /download/sequence/A_niger_CBS_513_88/current
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A_niger_CBS_513_88_version_s01-m04-r22_chromosomes.fasta.gz 13-May-2012 08:02 9.9M
A_niger_CBS_513_88_version_s01-m04-r22_not_feature.fasta.gz 13-May-2012 09:30 3.8M
A_niger_CBS_513_88_version_s01-m04-r22_orf_coding.fasta.gz 13-May-2012 08:59 6.5M
A_niger_CBS_513_88_version_s01-m04-r22_orf_genomic.fasta.gz 13-May-2012 08:17 7.6M
A_niger_CBS_513_88_version_s01-m04-r22_orf_genomic_1000.fasta.gz 13-May-2012 08:10 16M
A_niger_CBS_513_88_version_s01-m04-r22_orf_plus_intergenic.fasta.gz 13-May-2012 08:41 15M
A_niger_CBS_513_88_version_s01-m04-r22_orf_trans_all.fasta.gz 13-May-2012 09:18 4.5M
A_niger_CBS_513_88_version_s01-m04-r22_other_features_genomic.fasta.gz 13-May-2012 09:18 49K
A_niger_CBS_513_88_version_s01-m04-r22_other_features_genomic_1000.fasta.gz 13-May-2012 09:18 328K
A_niger_CBS_513_88_version_s01-m04-r22_other_features_no_introns.fasta.gz 13-May-2012 09:20 49K
A_niger_CBS_513_88_version_s01-m04-r22_other_features_plus_intergenic.fasta.gz 13-May-2012 09:19 286K
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EMBL_format/ 17-May-2012 13:33 -
This directory contains the current version of Aspergillus niger CBS 513.88
genomic sequences.
Aspergillus niger CBS 513.88 was originally sequenced by Gene Alliance
for DSM. Sequence and GFF annotation originally downloaded by AspGD
from GenBank on 24-Feb-2009.
* Chromosomal/contig sequence:
files ending in "chromosomes.fasta.gz"
* Sequence with no introns for all ORFs:
files ending in "orf_coding.fasta.gz"
* Sequence with introns for all ORFs:
files ending in "orf_genomic.fasta.gz"
* Sequence with introns and untranslated region 1000 bp upstream and
downstream for all ORFs:
files ending in "orf_genomic_1000.fasta.gz"
* Sequences with introns plus upstream and downstream intergenic
sequence for all ORFs:
files ending in "orf_plus_intergenic.fasta.gz"
* Translation of all ORFs:
files ending in "orf_trans_all.fasta.gz"
* Sequence of other genomic features, including introns (if any):
files ending in "other_features_genomic.fasta.gz"
* Sequence of the above genomic features, with introns (if any) removed:
files ending in "other_features_no_introns.fasta.gz"
* Sequence of the above genomic features, plus region 1000 bp upstream and downstream:
files ending in "other_features_genomic_1000.fasta.gz"
* Sequence of the above genomic features, plus region upstream and downstream
intergenic sequence
fines ending in "other_features_plus_intergenic.fasta.gz"
* Sequence between annotated chromosomal features:
files ending in "not_feature.fasta.gz"
Note: Features excluded from this file include:
Protein Coding Sequence
rRNA
repeat_region
tRNA
The notation "sXX-mYY-rZZ" in the filename indicates the genome
version to which data in the file corresponds. Detailed explanation
about the genome version can be found at:
http://www.aspgd.org/help/SequenceHelp.shtml
The files in this directory are in FASTA format.
All files are gzip compressed. There are several freely available
software options for decompressing gzipped files. The software
and other useful information is available on these web sites:
- WinZip (http://www.winzip.com/)
- Stuffit (http://www.stuffit.com/)
- Gzip (http://www.gzip.org/
and the gzip user's manual:
http://www.math.utah.edu/docs/info/gzip_toc.html
Additional sequence documentation is found on the AspGD web site at:
http://www.aspergillusgenome.org/help/SequenceHelp.shtml
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